PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT00493
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 149aa    MW: 17394.8 Da    PI: 10.7148
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT00493genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-0869115347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                       WT eE + lvd+v  +G g W++  ++      Rt+ ++k++w+++
         EMT00493  69 HWTSEEVKELVDGVSVYGVGPWTKLKNERFpiSIRTAVHLKDKWRNL 115
                      6***********************9876545*99***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.3562120IPR017930Myb domain
SuperFamilySSF466893.59E-1364118IPR009057Homeodomain-like
SMARTSM007170.002466118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-1069117IPR009057Homeodomain-like
CDDcd116605.17E-1770117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDFQALLEGP HDLDRWLKDY IAKSGWRHGS RVRSARERGT WSINIEPCSR DLRSTSEGQK  60
HGSRRNNDHW TSEEVKELVD GVSVYGVGPW TKLKNERFPI SIRTAVHLKD KWRNLVKAFT  120
GNVKRRISPR LDKDCVEKIK RLAADYPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756123.11e-28PREDICTED: uncharacterized protein LOC104583657 isoform X3
TrEMBLN1QS631e-107N1QS63_AEGTA; Uncharacterized protein
STRINGMLOC_37647.29e-80(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.11e-13TRF-like 3